Preface to the Second Edition |
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xvii | |
Preface to the First Edition |
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xix | |
Part 1 Introduction |
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1 | (10) |
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What Is A Bioprocess Engineer? |
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1 | (10) |
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1 | (1) |
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Biotechnology and Bioprocess Engineering |
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2 | (1) |
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Biologists and Engineers Differ in Their Approach to Research |
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3 | (1) |
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The Story of Penicillin: How Biologists and Engineers Work Together |
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3 | (5) |
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Bioprocesses: Regulatory Constraints |
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8 | (3) |
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Suggestions for Further Reading |
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10 | (1) |
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10 | (1) |
Part 2 The Basics of Biology: An Engineer's Perspective |
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11 | (234) |
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An Overview of Biological Basics |
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11 | (46) |
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11 | (14) |
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11 | (1) |
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12 | (2) |
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14 | (1) |
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15 | (4) |
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19 | (6) |
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25 | (21) |
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25 | (1) |
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26 | (8) |
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Carbohydrates: Mono- and Polysaccharides |
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34 | (4) |
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Lipids, Fats, and Steroids |
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38 | (2) |
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Nucleic Acids, RNA, and DNA |
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40 | (6) |
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46 | (7) |
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46 | (3) |
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49 | (1) |
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50 | (2) |
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52 | (1) |
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53 | (4) |
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Suggestions for Further Reading |
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54 | (1) |
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54 | (3) |
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57 | (48) |
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57 | (1) |
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58 | (2) |
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60 | (19) |
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60 | (1) |
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Mechanistic Models for Simple Enzyme Kinetics |
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61 | (3) |
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Experimentally Determining Rate Parameters for Michaelis-Menten Type Kinetics |
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64 | (3) |
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Models for More Complex Enzyme Kinetics |
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67 | (8) |
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Effects of pH and Temperature |
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75 | (3) |
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78 | (1) |
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Immobilized Enzyme Systems |
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79 | (12) |
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Methods of Immobilization |
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79 | (5) |
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Diffusional Limitations in Immobilized Enzyme Systems |
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84 | (7) |
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Electrostatic and Steric Effects in Immobilized Enzyme Systems |
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91 | (1) |
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Large-scale Production of Enzymes |
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91 | (1) |
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Medical and Industrial Utilization of Enzymes |
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92 | (4) |
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96 | (9) |
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Suggestions for Further Reading |
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97 | (1) |
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97 | (8) |
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105 | (28) |
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105 | (1) |
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105 | (2) |
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DNA Replication: Preserving and Propagating the Cellular Message |
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107 | (3) |
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Transcription: Sending the Message |
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110 | (3) |
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Translation: Message to Product |
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113 | (6) |
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Genetic Code: Universal Message |
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113 | (1) |
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Translation: How the Machinery Works |
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113 | (2) |
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Posttranslational Processing: Making the Product Useful |
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115 | (4) |
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119 | (5) |
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Genetic-level Control Which Proteins Are Synthesized? |
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119 | (4) |
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Metabolic Pathway Control |
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123 | (1) |
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How the Cell Senses Its Extracellular Environment |
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124 | (4) |
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Mechanisms to Transport Small Molecules across Cellular Membranes |
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124 | (3) |
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Role of Cell Receptors in Metabolism and Cellular Differentiation |
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127 | (1) |
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128 | (1) |
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Appendix: Examples of Regulation of Complex Pathways |
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129 | (4) |
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Suggestions for Further Reading |
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131 | (1) |
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131 | (2) |
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133 | (22) |
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133 | (1) |
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134 | (3) |
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Glucose Metabolism: Glycolysis and the TCA Cycle |
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137 | (4) |
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141 | (1) |
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Control Sites in Aerobic Glucose Metabolism |
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142 | (1) |
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Metabolism of Nitrogenous Compounds |
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143 | (1) |
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144 | (1) |
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Metabolism of Hydrocarbons |
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144 | (1) |
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145 | (3) |
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Overview of Anaerobic Metabolism |
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148 | (2) |
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Overview of Autotrophic Metabolism |
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150 | (2) |
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152 | (3) |
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Suggestions for Further Reading |
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154 | (1) |
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154 | (1) |
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155 | (52) |
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155 | (1) |
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156 | (19) |
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Quantifying Cell Concentration |
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156 | (4) |
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Growth Patterns and Kinetics in Batch Culture |
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160 | (9) |
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How Environmental Conditions Affect Growth Kinetics |
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169 | (4) |
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Heat Generation by Microbial Growth |
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173 | (2) |
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Quantifying Growth Kinetics |
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175 | (14) |
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175 | (1) |
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Using Unstructured Nonsegregated Models to Predict Specific Growth Rate |
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176 | (7) |
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Models for Transient Behavior |
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183 | (6) |
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189 | (1) |
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How Cells Grow in Continuous Culture |
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189 | (10) |
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189 | (1) |
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Some Specific Devices for Continuous Culture |
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190 | (1) |
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191 | (7) |
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198 | (1) |
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198 | (1) |
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199 | (8) |
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Suggestions for Further Reading |
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200 | (1) |
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200 | (7) |
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Stoichiometry of Microbial Growth and Product Formation |
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207 | (12) |
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207 | (1) |
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207 | (2) |
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Stoichiometric Calculations |
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209 | (6) |
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209 | (2) |
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211 | (4) |
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Theoretical Predictions of Yield Coefficients |
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215 | (1) |
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216 | (3) |
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Suggestions for Further Reading |
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216 | (1) |
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216 | (3) |
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How Cellular Information Is Altered |
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219 | (26) |
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219 | (1) |
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Evolving Desirable Biochemical Activities through Mutation and Selection |
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219 | (6) |
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220 | (1) |
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Selecting for Desirable Mutants |
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221 | (4) |
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Natural Mechanisms for Gene Transfer and Rearrangement |
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225 | (5) |
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225 | (2) |
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227 | (1) |
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227 | (1) |
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228 | (2) |
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Transposons: Internal Gene Transfer |
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230 | (1) |
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Genetically Engineering Cells |
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230 | (6) |
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Basic Elements of Genetic Engineering |
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230 | (5) |
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Genetic Engineering of Higher Organisms |
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235 | (1) |
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236 | (5) |
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237 | (3) |
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240 | (1) |
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241 | (4) |
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Suggestions for Further Reading |
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241 | (1) |
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242 | (3) |
Part 3 Engineering Principles for Bioprocesses |
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245 | (140) |
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Operating Considerations for Bioreactors for Suspension and Immobilized Cultures |
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245 | (40) |
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245 | (1) |
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Choosing the Cultivation Method |
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246 | (2) |
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Modifying Batch and Continuous Reactors |
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248 | (15) |
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248 | (2) |
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Multistage Chemostat Systems |
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250 | (6) |
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256 | (6) |
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262 | (1) |
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263 | (13) |
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263 | (1) |
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Active Immobilization of Cells |
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263 | (3) |
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Passive Immobilization: Biological Films |
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266 | (2) |
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Diffusional Limitations in Immobilized Cell Systems |
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268 | (5) |
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Bioreactor Considerations in Immobilized Cell Systems |
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273 | (3) |
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Solid-state Fermentations |
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276 | (2) |
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278 | (7) |
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Suggestions for Further Reading |
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280 | (1) |
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280 | (5) |
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Selection, Scale-Up Operation, and Control of Bioreactors |
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285 | (44) |
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285 | (1) |
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Scale-up and Its Difficulties |
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286 | (21) |
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286 | (1) |
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Overview of Reactor Types |
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286 | (6) |
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Some Considerations on Aeration, Agitation, and Heat Transfer |
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292 | (5) |
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297 | (4) |
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301 | (6) |
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Bioreactor Instrumentation and Control |
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307 | (7) |
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307 | (1) |
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Instrumentation for Measurements of Active Fermentation |
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307 | (4) |
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Using the Information Obtained |
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311 | (3) |
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Sterilization of Process Fluids |
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314 | (9) |
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Introduction and the Kinetics of Death |
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314 | (1) |
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315 | (5) |
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320 | (3) |
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323 | (6) |
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Suggestions for Further Reading |
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324 | (1) |
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325 | (4) |
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Recovery and Purification of Products |
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329 | (56) |
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Strategies to Recover and Purify Products |
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329 | (2) |
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Separation of Insoluble Products |
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331 | (10) |
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332 | (4) |
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336 | (4) |
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Coagulation and Flocculation |
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340 | (1) |
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341 | (2) |
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341 | (1) |
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342 | (1) |
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Separation of Soluble Products |
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343 | (35) |
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343 | (5) |
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Aqueous Two-phase Extraction |
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348 | (1) |
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349 | (2) |
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351 | (4) |
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355 | (1) |
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356 | (2) |
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Ultrafiltration and Microfiltration |
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358 | (2) |
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Cross flow Ultrafiltration and Microfiltration |
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360 | (5) |
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365 | (10) |
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375 | (1) |
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376 | (2) |
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Finishing Steps for Purification |
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378 | (1) |
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378 | (1) |
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378 | (1) |
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Integration of Reaction and Separation |
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379 | (1) |
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380 | (5) |
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Suggestions for Further Reading |
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381 | (1) |
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382 | (3) |
Part 4 Applications to Nonconventional Biological Systems |
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385 | (130) |
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Bioprocess Considerations in Using Animal Cell Cultures |
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385 | (20) |
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Structure and Biochemistry of Animal Cells |
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385 | (2) |
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Methods Used for the Cultivation of Animal Cells |
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387 | (9) |
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Bioreactor Considerations for Animal Cell Culture |
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396 | (4) |
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Products of Animal Cell Cultures |
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400 | (2) |
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400 | (1) |
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Immunobiological Regulators |
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401 | (1) |
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401 | (1) |
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401 | (1) |
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401 | (1) |
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402 | (1) |
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Whole Cells and Tissue Culture |
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402 | (1) |
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402 | (3) |
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Suggestions for Further Reading |
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403 | (1) |
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403 | (2) |
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Bioprocess Considerations in Using Plant Cell Cultures |
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405 | (16) |
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405 | (2) |
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Plant Cells in Culture Compared to Microbes |
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407 | (4) |
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Bioreactor Considerations |
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411 | (6) |
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Bioreactors for Suspension Cultures |
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411 | (2) |
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Reactors Using Cell Immobilization |
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413 | (1) |
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Bioreactors for Organized Tissues |
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414 | (3) |
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Economics of Plant Cell Tissue Cultures |
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417 | (1) |
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417 | (4) |
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Suggestions for Further Reading |
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418 | (1) |
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418 | (3) |
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Utilizing Genetically Engineered Organisms |
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421 | (42) |
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421 | (1) |
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How the Product Influences Process Decisions |
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421 | (3) |
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Guidelines for Choosing Host-Vector Systems |
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424 | (9) |
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424 | (1) |
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424 | (2) |
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426 | (1) |
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427 | (1) |
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428 | (1) |
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Insect Cell-Baculovirus System |
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429 | (1) |
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430 | (2) |
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Transgenic Plants and Plant Cell Culture |
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432 | (1) |
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432 | (1) |
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Process Constraints: Genetic Instability |
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433 | (5) |
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434 | (2) |
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Plasmid Structural Instability |
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436 | (1) |
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436 | (1) |
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Growth-rate-dominated Instability |
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437 | (1) |
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Considerations in Plasmid Design to Avoid Process Problems |
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438 | (3) |
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Predicting Host-Vector Interactions and Genetic Instability |
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441 | (10) |
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Regulatory Constraints on Genetic Processes |
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451 | (1) |
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452 | (4) |
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456 | (1) |
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457 | (6) |
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Suggestions for Further Reading |
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458 | (2) |
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460 | (3) |
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Medical Applications of Bioprocess Engineering |
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463 | (12) |
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463 | (1) |
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463 | (4) |
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What Is Tissue Engineering? |
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463 | (2) |
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Commercial Tissue Culture Processes |
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465 | (2) |
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Gene Therapy Using Viral Vectors |
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467 | (4) |
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Models of Viral Infection |
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467 | (3) |
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Mass Production of Retrovirus |
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470 | (1) |
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471 | (2) |
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Stem Cells and Hematopoiesis |
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471 | (1) |
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Extracorporeal Artificial Liver |
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472 | (1) |
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473 | (2) |
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Suggestions for Further Reading |
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473 | (1) |
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473 | (2) |
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475 | (38) |
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475 | (1) |
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Major Classes of Interactions in Mixed Cultures |
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476 | (3) |
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Simple Models Describing Mixed-culture Interactions |
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479 | (6) |
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485 | (2) |
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Industrial Utilization of Mixed Cultures |
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487 | (1) |
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Biological Waste Treatment: An Example of the Industrial Utilization of Mixed Cultures |
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488 | (20) |
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488 | (3) |
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Biological Waste Treatment Processes |
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491 | (10) |
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Advanced Waste-water Treatment Systems |
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501 | (5) |
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Conversion of Waste Water to Useful Products |
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506 | (2) |
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508 | (5) |
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Suggestions for Further Reading |
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508 | (1) |
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509 | (4) |
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513 | (2) |
APPENDIX TRADITIONAL INDUSTRIAL BIOPROCESSES |
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515 | (20) |
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A.1. Anaerobic Bioprocesses |
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515 | (9) |
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A.1.1. Ethanol Production |
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515 | (4) |
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A.1.2. Lactic Acid Production |
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519 | (2) |
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A.1.3. Acetone-Butanol Production |
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521 | (3) |
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524 | (11) |
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A.2.1. Citric Acid Production |
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524 | (2) |
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A.2.2. Production of Bakers' Yeast |
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526 | (1) |
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A.2.3. Production of Penicillins |
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527 | (3) |
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A.2.4. Production of High-Fructose Corn Syrup (HFCS) |
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530 | (3) |
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Suggestions for Further Reading |
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533 | (2) |
Index |
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535 | |